Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1BO60663 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
LMX1BO60663 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1BO60663 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1BO60663 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.72■□□□□ 0.11
LMX1BO60663 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1BO60663 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LMX1BO60663 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1BO60663 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1BO60663 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 AC132938.6-201ENST00000623828 1655 ntBASIC15.71■□□□□ 0.11
LMX1BO60663 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.71■□□□□ 0.11
LMX1BO60663 PCDHA12-202ENST00000613593 2588 ntBASIC15.71■□□□□ 0.11
LMX1BO60663 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.71■□□□□ 0.11
LMX1BO60663 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LMX1BO60663 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1BO60663 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1BO60663 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1BO60663 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.71■□□□□ 0.11
LMX1BO60663 AC010240.3-201ENST00000607688 395 ntBASIC15.71■□□□□ 0.11
LMX1BO60663 AC083849.1-201ENST00000615227 514 ntBASIC15.71■□□□□ 0.11
LMX1BO60663 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LMX1BO60663 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.71■□□□□ 0.11
LMX1BO60663 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LMX1BO60663 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LMX1BO60663 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1BO60663 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.71■□□□□ 0.1
LMX1BO60663 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1BO60663 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1BO60663 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1BO60663 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LMX1BO60663 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LMX1BO60663 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.7■□□□□ 0.1
LMX1BO60663 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LMX1BO60663 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LMX1BO60663 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.7■□□□□ 0.1
LMX1BO60663 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.7■□□□□ 0.1
LMX1BO60663 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.7■□□□□ 0.1
LMX1BO60663 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.7■□□□□ 0.1
LMX1BO60663 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.7■□□□□ 0.1
LMX1BO60663 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LMX1BO60663 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.7■□□□□ 0.1
LMX1BO60663 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LMX1BO60663 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LMX1BO60663 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1BO60663 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1BO60663 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
LMX1BO60663 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.69■□□□□ 0.1
LMX1BO60663 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1BO60663 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms