Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PRKNO60260 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.62■□□□□ 0.25
PRKNO60260 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.62■□□□□ 0.25
PRKNO60260 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
PRKNO60260 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.62■□□□□ 0.25
PRKNO60260 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
PRKNO60260 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
PRKNO60260 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 AL450487.1-201ENST00000426799 995 ntBASIC16.62■□□□□ 0.25
PRKNO60260 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.62■□□□□ 0.25
PRKNO60260 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.62■□□□□ 0.25
PRKNO60260 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PRKNO60260 UNC93B7-201ENST00000509439 705 ntBASIC16.62■□□□□ 0.25
PRKNO60260 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.62■□□□□ 0.25
PRKNO60260 BNIP3P18-201ENST00000593976 575 ntBASIC16.62■□□□□ 0.25
PRKNO60260 AL121894.2-201ENST00000602977 491 ntBASIC16.62■□□□□ 0.25
PRKNO60260 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.62■□□□□ 0.25
PRKNO60260 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PRKNO60260 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 AC012317.2-201ENST00000623305 2251 ntBASIC16.62■□□□□ 0.25
PRKNO60260 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.62■□□□□ 0.25
PRKNO60260 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PRKNO60260 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PRKNO60260 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.61■□□□□ 0.25
PRKNO60260 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.61■□□□□ 0.25
PRKNO60260 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.61■□□□□ 0.25
PRKNO60260 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.61■□□□□ 0.25
PRKNO60260 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.61■□□□□ 0.25
PRKNO60260 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PRKNO60260 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 KRT8P47-201ENST00000604727 1398 ntBASIC16.61■□□□□ 0.25
PRKNO60260 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.61■□□□□ 0.25
PRKNO60260 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PRKNO60260 AC067852.2-201ENST00000590513 2313 ntBASIC16.61■□□□□ 0.25
PRKNO60260 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 NOC2LP1-202ENST00000452600 2235 ntBASIC16.6■□□□□ 0.25
PRKNO60260 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 TSPY19P-201ENST00000418461 509 ntBASIC16.6■□□□□ 0.25
PRKNO60260 TSPY18P-201ENST00000441642 509 ntBASIC16.6■□□□□ 0.25
PRKNO60260 MINOS1P3-201ENST00000457048 203 ntBASIC16.6■□□□□ 0.25
PRKNO60260 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
PRKNO60260 DUTP2-201ENST00000519164 463 ntBASIC16.6■□□□□ 0.25
PRKNO60260 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.6■□□□□ 0.25
PRKNO60260 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PRKNO60260 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.6■□□□□ 0.25
PRKNO60260 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms