Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC100803.2-201ENST00000562459 1963 ntBASIC16.97■□□□□ 0.31
PROM1O43490 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 TSPY22P-201ENST00000427496 604 ntBASIC16.97■□□□□ 0.31
PROM1O43490 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.97■□□□□ 0.31
PROM1O43490 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.97■□□□□ 0.31
PROM1O43490 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.97■□□□□ 0.31
PROM1O43490 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.97■□□□□ 0.31
PROM1O43490 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.97■□□□□ 0.31
PROM1O43490 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.97■□□□□ 0.31
PROM1O43490 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.97■□□□□ 0.31
PROM1O43490 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.97■□□□□ 0.31
PROM1O43490 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.97■□□□□ 0.31
PROM1O43490 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PROM1O43490 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.97■□□□□ 0.31
PROM1O43490 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PROM1O43490 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 OR6D1P-202ENST00000641007 5290 ntBASIC16.96■□□□□ 0.31
PROM1O43490 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.96■□□□□ 0.31
PROM1O43490 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.96■□□□□ 0.31
PROM1O43490 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PROM1O43490 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.96■□□□□ 0.31
PROM1O43490 AC068472.1-201ENST00000474589 881 ntBASIC16.96■□□□□ 0.31
PROM1O43490 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
PROM1O43490 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PROM1O43490 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PROM1O43490 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PROM1O43490 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.96■□□□□ 0.3
PROM1O43490 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.96■□□□□ 0.3
PROM1O43490 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PROM1O43490 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.95■□□□□ 0.3
PROM1O43490 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 AC112698.1-201ENST00000510299 916 ntBASIC16.95■□□□□ 0.3
PROM1O43490 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.95■□□□□ 0.3
PROM1O43490 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 AC116407.4-201ENST00000623319 1061 ntBASIC16.95■□□□□ 0.3
PROM1O43490 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.95■□□□□ 0.3
PROM1O43490 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.95■□□□□ 0.3
PROM1O43490 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
PROM1O43490 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.95■□□□□ 0.3
PROM1O43490 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PROM1O43490 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.94■□□□□ 0.3
PROM1O43490 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PROM1O43490 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms