Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGB3O15347 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB3O15347 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 AC006116.8-202ENST00000587620 1550 ntBASIC14.39□□□□□ -0.11
HMGB3O15347 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGB3O15347 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HMGB3O15347 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB3O15347 AF201337.1-201ENST00000520239 748 ntBASIC14.39□□□□□ -0.11
HMGB3O15347 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB3O15347 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB3O15347 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB3O15347 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 AL121829.2-201ENST00000620908 328 ntBASIC14.39□□□□□ -0.11
HMGB3O15347 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
HMGB3O15347 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB3O15347 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB3O15347 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB3O15347 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
HMGB3O15347 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
HMGB3O15347 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.38□□□□□ -0.11
HMGB3O15347 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HMGB3O15347 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
HMGB3O15347 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB3O15347 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 AC008741.2-201ENST00000612792 3115 ntBASIC14.38□□□□□ -0.11
HMGB3O15347 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGB3O15347 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
HMGB3O15347 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms