Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC080080.1-201ENST00000625121 2420 ntBASIC17.55■□□□□ 0.4
TMX2-CTNND1H3BSU7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 NUS1P2-201ENST00000417358 873 ntBASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 GPALPP1-207ENST00000611650 899 ntBASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TMX2-CTNND1H3BSU7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 AL163051.1-201ENST00000569214 1512 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 HEIH-201ENST00000623091 1652 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC113404.2-201ENST00000507884 177 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 AL591684.3-201ENST00000605187 298 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 BX640515.1-201ENST00000617215 977 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC117500.6-201ENST00000624871 588 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 KRT8P50-201ENST00000562022 1438 ntBASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TMX2-CTNND1H3BSU7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms