Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AKAP8P1-201ENST00000434743 1349 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AC092933.1-201ENST00000393644 945 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AL671277.1-201ENST00000429656 993 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AC243562.1-201ENST00000560672 389 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 AL135744.1-201ENST00000565098 629 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 SIRPAP1-201ENST00000448467 1770 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AC005082.1-201ENST00000413042 2259 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A5A8TX70 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A5A8TX70 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A5A8TX70 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A5A8TX70 GNAS-203ENST00000306120 1878 ntBASIC13.71□□□□□ -0.22
COL6A5A8TX70 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A5A8TX70 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A5A8TX70 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.22
COL6A5A8TX70 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 FP475955.4-201ENST00000623131 1990 ntBASIC13.7□□□□□ -0.22
COL6A5A8TX70 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 AL355306.1-201ENST00000415580 579 ntBASIC13.7□□□□□ -0.22
COL6A5A8TX70 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 RN7SL190P-201ENST00000582519 257 ntBASIC13.7□□□□□ -0.22
COL6A5A8TX70 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 AL353779.1-201ENST00000434793 351 ntBASIC13.7□□□□□ -0.22
COL6A5A8TX70 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A5A8TX70 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A5A8TX70 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC119751.2-201ENST00000504529 210 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC026150.2-201ENST00000564693 1156 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 ACTL9-202ENST00000612068 1252 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC079140.1-201ENST00000508039 487 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC004233.3-201ENST00000607794 1269 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC099568.2-201ENST00000609194 695 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms