Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC092597.1-201ENST00000487352 616 ntBASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC140113.3-201ENST00000605663 199 ntBASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC011558.1-201ENST00000623459 338 ntBASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 AD000864.1-201ENST00000624076 2295 ntBASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
TCRBV7S3A2A0A539 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
TCRBV7S3A2A0A539 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
TCRBV7S3A2A0A539 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.14■□□□□ 0.5
TCRBV7S3A2A0A539 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
TCRBV7S3A2A0A539 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 HLA-F-220ENST00000434407 884 ntBASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.14■□□□□ 0.49
TCRBV7S3A2A0A539 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 COX11P1-201ENST00000489116 835 ntBASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TCRBV7S3A2A0A539 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.12■□□□□ 0.49
TCRBV7S3A2A0A539 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms