Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 AC079602.3-201ENST00000623931 403 ntBASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDHA3Q9Y5H8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 HTR7P1-202ENST00000624664 4411 ntBASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 AL391807.1-203ENST00000604392 2365 ntBASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.67■□□□□ 0.58
PCDHA3Q9Y5H8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 AL596275.1-201ENST00000423464 877 ntBASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 RASA4DP-201ENST00000460726 1199 ntBASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 AC145285.6-201ENST00000604632 637 ntBASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHA3Q9Y5H8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AL023973.1-201ENST00000624619 620 ntBASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHA3Q9Y5H8 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms