Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL596442.2-201ENST00000610240 980 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 AL161938.1-201ENST00000569833 2180 ntBASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 RFPL4AP1-201ENST00000530883 850 ntBASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHGA1Q9Y5H4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 CRYGEP-201ENST00000412192 528 ntBASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 KRT18P2-201ENST00000447938 1258 ntBASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 CYMP-203ENST00000474680 1263 ntBASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 C20orf181-201ENST00000623918 480 ntBASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDHGA1Q9Y5H4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 MKNK2P1-201ENST00000437526 628 ntBASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 MIR4469-201ENST00000583919 79 ntBASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms