Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 MTDHP3-201ENST00000594186 672 ntBASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 AC011467.2-201ENST00000598425 242 ntBASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 AF228730.7-201ENST00000641842 219 ntBASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
SSX2IPQ9Y2D8 AC020916.1-201ENST00000587762 1774 ntBASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 INTS4P1-201ENST00000438455 1935 ntBASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 RNPS1P1-201ENST00000507437 918 ntBASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX2IPQ9Y2D8 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 AC125634.1-201ENST00000438758 1403 ntBASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 AC018712.1-201ENST00000455767 687 ntBASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 FGFR3P6-201ENST00000457012 610 ntBASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SSX2IPQ9Y2D8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 MIR574-201ENST00000385209 96 ntBASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.19■□□□□ 0.66
SSX2IPQ9Y2D8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms