Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 MTND4LP12-201ENST00000448237 295 ntBASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS9D1Q9Y2B5 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 PCDHB18P-201ENST00000524813 2368 ntBASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 DDX43P3-201ENST00000441064 443 ntBASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 KRT18P38-201ENST00000449496 1282 ntBASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 AC022616.7-201ENST00000525383 220 ntBASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 AC012317.2-201ENST00000623305 2251 ntBASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS9D1Q9Y2B5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AL353692.3-201ENST00000407031 1396 ntBASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AC012497.1-201ENST00000429392 575 ntBASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AC104076.2-201ENST00000448912 469 ntBASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 AC100803.2-201ENST00000562459 1963 ntBASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS9D1Q9Y2B5 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS9D1Q9Y2B5 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS9D1Q9Y2B5 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS9D1Q9Y2B5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms