Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
FOXA2Q9Y261 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.48□□□□□ -0.09
FOXA2Q9Y261 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 MIR3917-201ENST00000580971 93 ntBASIC14.48□□□□□ -0.09
FOXA2Q9Y261 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA2Q9Y261 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AC022898.2-201ENST00000616822 1312 ntBASIC14.47□□□□□ -0.09
FOXA2Q9Y261 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AC132938.6-201ENST00000623828 1655 ntBASIC14.47□□□□□ -0.09
FOXA2Q9Y261 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AC104076.2-201ENST00000448912 469 ntBASIC14.47□□□□□ -0.09
FOXA2Q9Y261 DUX4L26-201ENST00000489078 1255 ntBASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA2Q9Y261 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms