Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 AL355306.1-201ENST00000415580 579 ntBASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 TREML5P-201ENST00000421694 576 ntBASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 COQ9-214ENST00000567933 882 ntTSL 3 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC26.84■■□□□ 1.89
COL17A1Q9UMD9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 RN7SL692P-201ENST00000464677 288 ntBASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC26.83■■□□□ 1.89
COL17A1Q9UMD9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.88
COL17A1Q9UMD9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
COL17A1Q9UMD9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AC107890.1-201ENST00000422478 521 ntBASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 DDX43P3-201ENST00000441064 443 ntBASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AL662799.1-202ENST00000614205 422 ntBASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 AC132938.6-201ENST00000623828 1655 ntBASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC26.82■■□□□ 1.88
COL17A1Q9UMD9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 SERBP1P5-201ENST00000510079 1181 ntBASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 MYLKP1-201ENST00000509077 1580 ntBASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 AC026120.1-201ENST00000611536 926 ntBASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 MIR6799-201ENST00000620297 69 ntBASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC26.81■■□□□ 1.88
COL17A1Q9UMD9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 S100A2-206ENST00000497140 697 ntTSL 2 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 CXCL1P1-201ENST00000502804 216 ntBASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 COQ6-210ENST00000554920 649 ntTSL 3 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 AL358472.5-202ENST00000641448 1267 ntBASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
COL17A1Q9UMD9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms