Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21■□□□□ 0.95
DDX4Q9NQI0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
DDX4Q9NQI0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21■□□□□ 0.95
DDX4Q9NQI0 AC007967.2-201ENST00000432613 625 ntBASIC21■□□□□ 0.95
DDX4Q9NQI0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC21■□□□□ 0.95
DDX4Q9NQI0 KRT18P3-201ENST00000451602 1288 ntBASIC21■□□□□ 0.95
DDX4Q9NQI0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21■□□□□ 0.95
DDX4Q9NQI0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21■□□□□ 0.95
DDX4Q9NQI0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 AC087289.5-201ENST00000586076 3175 ntBASIC20.99■□□□□ 0.95
DDX4Q9NQI0 AP000997.3-201ENST00000623333 2250 ntBASIC20.99■□□□□ 0.95
DDX4Q9NQI0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 MIR1233-2-201ENST00000408138 82 ntBASIC20.99■□□□□ 0.95
DDX4Q9NQI0 MIR1233-1-201ENST00000408722 82 ntBASIC20.99■□□□□ 0.95
DDX4Q9NQI0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
DDX4Q9NQI0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 AL020989.1-201ENST00000422979 469 ntBASIC20.98■□□□□ 0.95
DDX4Q9NQI0 AL591424.1-201ENST00000442569 1213 ntBASIC20.98■□□□□ 0.95
DDX4Q9NQI0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.98■□□□□ 0.95
DDX4Q9NQI0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
DDX4Q9NQI0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 AC006557.2-201ENST00000592985 1240 ntBASIC20.97■□□□□ 0.95
DDX4Q9NQI0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 AC055717.3-201ENST00000622967 595 ntBASIC20.97■□□□□ 0.95
DDX4Q9NQI0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.97■□□□□ 0.95
DDX4Q9NQI0 AC006504.4-201ENST00000592118 1568 ntBASIC20.97■□□□□ 0.95
DDX4Q9NQI0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DDX4Q9NQI0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AC004408.2-201ENST00000623613 2777 ntBASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 ELK2BP-201ENST00000415014 1224 ntBASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms