Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 CRYGFP-201ENST00000418459 633 ntBASIC17.11■□□□□ 0.33
PIF1Q9H611 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.11■□□□□ 0.33
PIF1Q9H611 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.11■□□□□ 0.33
PIF1Q9H611 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PIF1Q9H611 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 AC100803.2-201ENST00000562459 1963 ntBASIC17.11■□□□□ 0.33
PIF1Q9H611 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PIF1Q9H611 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.11■□□□□ 0.33
PIF1Q9H611 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.1■□□□□ 0.33
PIF1Q9H611 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PIF1Q9H611 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.1■□□□□ 0.33
PIF1Q9H611 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PIF1Q9H611 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PIF1Q9H611 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.1■□□□□ 0.33
PIF1Q9H611 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.1■□□□□ 0.33
PIF1Q9H611 NUDT16P1-203ENST00000513809 620 ntBASIC17.1■□□□□ 0.33
PIF1Q9H611 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.1■□□□□ 0.33
PIF1Q9H611 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.1■□□□□ 0.33
PIF1Q9H611 DGCR10-201ENST00000609839 495 ntBASIC17.1■□□□□ 0.33
PIF1Q9H611 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.1■□□□□ 0.33
PIF1Q9H611 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PIF1Q9H611 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.09■□□□□ 0.33
PIF1Q9H611 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PIF1Q9H611 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.09■□□□□ 0.33
PIF1Q9H611 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PIF1Q9H611 MIR4785-201ENST00000585005 73 ntBASIC17.09■□□□□ 0.33
PIF1Q9H611 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 KRT17P2-201ENST00000300992 1314 ntBASIC17.09■□□□□ 0.33
PIF1Q9H611 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.09■□□□□ 0.33
PIF1Q9H611 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.09■□□□□ 0.33
PIF1Q9H611 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.09■□□□□ 0.33
PIF1Q9H611 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.09■□□□□ 0.33
PIF1Q9H611 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PIF1Q9H611 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PIF1Q9H611 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
PIF1Q9H611 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms