Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 C1QL1P1-201ENST00000568105 661 ntBASIC15.83■□□□□ 0.12
MMP28Q9H239 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.83■□□□□ 0.12
MMP28Q9H239 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.83■□□□□ 0.12
MMP28Q9H239 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.83■□□□□ 0.12
MMP28Q9H239 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.83■□□□□ 0.12
MMP28Q9H239 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
MMP28Q9H239 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.83■□□□□ 0.12
MMP28Q9H239 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.83■□□□□ 0.12
MMP28Q9H239 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MMP28Q9H239 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.83■□□□□ 0.12
MMP28Q9H239 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.83■□□□□ 0.12
MMP28Q9H239 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MMP28Q9H239 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MMP28Q9H239 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
MMP28Q9H239 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
MMP28Q9H239 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MMP28Q9H239 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 MIR718-201ENST00000390190 70 ntBASIC15.82■□□□□ 0.12
MMP28Q9H239 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.82■□□□□ 0.12
MMP28Q9H239 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MMP28Q9H239 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.82■□□□□ 0.12
MMP28Q9H239 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MMP28Q9H239 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
MMP28Q9H239 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
MMP28Q9H239 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.81■□□□□ 0.12
MMP28Q9H239 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.81■□□□□ 0.12
MMP28Q9H239 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.81■□□□□ 0.12
MMP28Q9H239 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms