Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.34■■□□□ 1.01
UPF3BQ9BZI7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 AC092597.1-201ENST00000487352 616 ntBASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 YBX1P2-201ENST00000489612 999 ntBASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 AC008687.5-201ENST00000593746 558 ntBASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 AC024563.2-201ENST00000603282 481 ntBASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 AC009949.1-201ENST00000623048 1830 ntBASIC21.33■■□□□ 1.01
UPF3BQ9BZI7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
UPF3BQ9BZI7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
UPF3BQ9BZI7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.33■■□□□ 1
UPF3BQ9BZI7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 AC117947.1-201ENST00000427448 529 ntBASIC21.32■■□□□ 1
UPF3BQ9BZI7 AL137013.1-201ENST00000432946 1228 ntBASIC21.32■■□□□ 1
UPF3BQ9BZI7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 KRT18P57-201ENST00000443599 1254 ntBASIC21.32■■□□□ 1
UPF3BQ9BZI7 AC113404.2-201ENST00000507884 177 ntBASIC21.32■■□□□ 1
UPF3BQ9BZI7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.32■■□□□ 1
UPF3BQ9BZI7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPF3BQ9BZI7 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.31■■□□□ 1
UPF3BQ9BZI7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPF3BQ9BZI7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.31■■□□□ 1
UPF3BQ9BZI7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 159.5 ms