Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LRFN3Q9BTN0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.71■□□□□ 0.43
LRFN3Q9BTN0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LRFN3Q9BTN0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.71■□□□□ 0.42
LRFN3Q9BTN0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
LRFN3Q9BTN0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 AC098614.1-201ENST00000368528 745 ntBASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 RN7SL589P-201ENST00000481268 310 ntBASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LRFN3Q9BTN0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 AC022210.1-201ENST00000449856 793 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 INE1-201ENST00000456273 945 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 KRT17P8-201ENST00000540749 863 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 RAB43P1-201ENST00000561790 589 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRFN3Q9BTN0 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 SPDYE14P-201ENST00000442619 822 ntBASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 AL513480.1-201ENST00000451731 511 ntBASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 AC010460.3-201ENST00000511359 1579 ntBASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRFN3Q9BTN0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRFN3Q9BTN0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.67■□□□□ 0.42
LRFN3Q9BTN0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRFN3Q9BTN0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRFN3Q9BTN0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms