Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL12A1Q99715 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 TIMM8BP1-201ENST00000452384 211 ntBASIC15.5■□□□□ 0.07
COL12A1Q99715 AL032819.2-201ENST00000624543 2162 ntBASIC15.5■□□□□ 0.07
COL12A1Q99715 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC15.5■□□□□ 0.07
COL12A1Q99715 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 AC107890.1-201ENST00000422478 521 ntBASIC15.5■□□□□ 0.07
COL12A1Q99715 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.5■□□□□ 0.07
COL12A1Q99715 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.5■□□□□ 0.07
COL12A1Q99715 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.5■□□□□ 0.07
COL12A1Q99715 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.5■□□□□ 0.07
COL12A1Q99715 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.5■□□□□ 0.07
COL12A1Q99715 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL12A1Q99715 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
COL12A1Q99715 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.49■□□□□ 0.07
COL12A1Q99715 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 AC074386.1-202ENST00000463561 864 ntBASIC15.49■□□□□ 0.07
COL12A1Q99715 AC096734.2-201ENST00000562054 433 ntBASIC15.49■□□□□ 0.07
COL12A1Q99715 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.49■□□□□ 0.07
COL12A1Q99715 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.49■□□□□ 0.07
COL12A1Q99715 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.49■□□□□ 0.07
COL12A1Q99715 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.49■□□□□ 0.07
COL12A1Q99715 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.49■□□□□ 0.07
COL12A1Q99715 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.49■□□□□ 0.07
COL12A1Q99715 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.49■□□□□ 0.07
COL12A1Q99715 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
COL12A1Q99715 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 KRT18P65-201ENST00000439811 1286 ntBASIC15.49■□□□□ 0.07
COL12A1Q99715 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.49■□□□□ 0.07
COL12A1Q99715 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL12A1Q99715 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.49■□□□□ 0.07
COL12A1Q99715 NCF1C-201ENST00000438382 1427 ntBASIC15.49■□□□□ 0.07
COL12A1Q99715 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.48■□□□□ 0.07
COL12A1Q99715 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
COL12A1Q99715 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.48■□□□□ 0.07
COL12A1Q99715 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.48■□□□□ 0.07
COL12A1Q99715 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.48■□□□□ 0.07
COL12A1Q99715 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.48■□□□□ 0.07
COL12A1Q99715 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 ACA64.2-201ENST00000459014 129 ntBASIC15.48■□□□□ 0.07
COL12A1Q99715 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 AC125807.1-201ENST00000483097 614 ntBASIC15.48■□□□□ 0.07
COL12A1Q99715 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 AC009102.3-201ENST00000623118 1491 ntBASIC15.48■□□□□ 0.07
COL12A1Q99715 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL12A1Q99715 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC15.48■□□□□ 0.07
COL12A1Q99715 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.48■□□□□ 0.07
COL12A1Q99715 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC141586.3-201ENST00000562166 1838 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC097493.3-201ENST00000509725 367 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL12A1Q99715 AC099522.2-201ENST00000607001 744 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 AL390754.1-201ENST00000619088 582 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 REXO1L3P-201ENST00000622202 1288 ntBASIC15.47■□□□□ 0.07
COL12A1Q99715 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.47■□□□□ 0.07
COL12A1Q99715 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms