Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SPENQ96T58 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.02■□□□□ 0.15
SPENQ96T58 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SPENQ96T58 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.01■□□□□ 0.15
SPENQ96T58 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.01■□□□□ 0.15
SPENQ96T58 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.01■□□□□ 0.15
SPENQ96T58 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 ELK2BP-201ENST00000415014 1224 ntBASIC16.01■□□□□ 0.15
SPENQ96T58 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.01■□□□□ 0.15
SPENQ96T58 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 KRT19P2-202ENST00000557173 1012 ntBASIC16.01■□□□□ 0.15
SPENQ96T58 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.01■□□□□ 0.15
SPENQ96T58 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.01■□□□□ 0.15
SPENQ96T58 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 AC006557.2-201ENST00000592985 1240 ntBASIC16.01■□□□□ 0.15
SPENQ96T58 AC010654.1-201ENST00000615722 808 ntBASIC16.01■□□□□ 0.15
SPENQ96T58 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.01■□□□□ 0.15
SPENQ96T58 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SPENQ96T58 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SPENQ96T58 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16■□□□□ 0.15
SPENQ96T58 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
SPENQ96T58 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16■□□□□ 0.15
SPENQ96T58 C20orf181-201ENST00000623918 480 ntBASIC16■□□□□ 0.15
SPENQ96T58 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16■□□□□ 0.15
SPENQ96T58 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
SPENQ96T58 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SPENQ96T58 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16■□□□□ 0.15
SPENQ96T58 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SPENQ96T58 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16■□□□□ 0.15
SPENQ96T58 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16■□□□□ 0.15
SPENQ96T58 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16■□□□□ 0.15
SPENQ96T58 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SPENQ96T58 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.99■□□□□ 0.15
SPENQ96T58 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC138761.1-201ENST00000584393 385 ntBASIC15.99■□□□□ 0.15
SPENQ96T58 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.99■□□□□ 0.15
SPENQ96T58 CROCCP3-202ENST00000420820 1947 ntBASIC15.99■□□□□ 0.15
SPENQ96T58 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC239800.4-201ENST00000603712 296 ntBASIC15.99■□□□□ 0.15
SPENQ96T58 AC093512.1-201ENST00000617969 520 ntBASIC15.99■□□□□ 0.15
SPENQ96T58 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
SPENQ96T58 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SPENQ96T58 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.99■□□□□ 0.15
SPENQ96T58 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.99■□□□□ 0.15
SPENQ96T58 AC011467.4-201ENST00000594891 528 ntBASIC15.99■□□□□ 0.15
SPENQ96T58 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms