Protein–RNA interactions for Protein: Q96JH7

VCPIP1, Deubiquitinating protein VCIP135, humanhuman

Predictions only

Length 1,222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPIP1Q96JH7 REXO1L11P-201ENST00000620964 1927 ntBASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.83■□□□□ 0.6
VCPIP1Q96JH7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 RNF126P1-202ENST00000569893 925 ntBASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VCPIP1Q96JH7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AC097374.2-201ENST00000618617 1306 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 BX276092.7-203ENST00000637198 1536 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AC096633.1-201ENST00000422446 749 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AL671277.2-201ENST00000458060 996 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 Z83836.1-201ENST00000624605 1642 ntBASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCPIP1Q96JH7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCPIP1Q96JH7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms