Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC068472.1-201ENST00000474589 881 ntBASIC21.05■□□□□ 0.96
BRF1Q92994 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 AC112698.1-201ENST00000510299 916 ntBASIC21.05■□□□□ 0.96
BRF1Q92994 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.05■□□□□ 0.96
BRF1Q92994 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.05■□□□□ 0.96
BRF1Q92994 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.05■□□□□ 0.96
BRF1Q92994 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.05■□□□□ 0.96
BRF1Q92994 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.05■□□□□ 0.96
BRF1Q92994 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
BRF1Q92994 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
BRF1Q92994 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.04■□□□□ 0.96
BRF1Q92994 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF1Q92994 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 AL136038.3-201ENST00000561909 1096 ntBASIC21.04■□□□□ 0.96
BRF1Q92994 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
BRF1Q92994 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.04■□□□□ 0.96
BRF1Q92994 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BRF1Q92994 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
BRF1Q92994 HCG11-201ENST00000411553 5696 ntBASIC21.03■□□□□ 0.96
BRF1Q92994 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.03■□□□□ 0.96
BRF1Q92994 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
BRF1Q92994 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.03■□□□□ 0.96
BRF1Q92994 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.03■□□□□ 0.96
BRF1Q92994 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.03■□□□□ 0.96
BRF1Q92994 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.03■□□□□ 0.96
BRF1Q92994 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BRF1Q92994 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
BRF1Q92994 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.02■□□□□ 0.96
BRF1Q92994 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.02■□□□□ 0.96
BRF1Q92994 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
BRF1Q92994 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 AC138932.1-201ENST00000534164 6830 ntBASIC21.02■□□□□ 0.96
BRF1Q92994 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 MTCL1P1-201ENST00000446207 792 ntBASIC21.02■□□□□ 0.96
BRF1Q92994 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.02■□□□□ 0.96
BRF1Q92994 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.02■□□□□ 0.96
BRF1Q92994 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BRF1Q92994 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
BRF1Q92994 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
BRF1Q92994 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF1Q92994 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
BRF1Q92994 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF1Q92994 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BRF1Q92994 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 BCL2-203ENST00000589955 5011 ntBASIC21.01■□□□□ 0.95
BRF1Q92994 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BRF1Q92994 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.01■□□□□ 0.95
BRF1Q92994 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.01■□□□□ 0.95
BRF1Q92994 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.01■□□□□ 0.95
BRF1Q92994 TSPY22P-201ENST00000427496 604 ntBASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms