Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 AC122714.2-201ENST00000502787 707 ntBASIC17.37■□□□□ 0.37
LMX1AQ8TE12 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 DUTP2-201ENST00000519164 463 ntBASIC17.37■□□□□ 0.37
LMX1AQ8TE12 AC092865.5-201ENST00000545435 363 ntBASIC17.37■□□□□ 0.37
LMX1AQ8TE12 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 IGHV3-22-201ENST00000520721 359 ntBASIC17.36■□□□□ 0.37
LMX1AQ8TE12 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 AC008735.5-201ENST00000623544 497 ntBASIC17.36■□□□□ 0.37
LMX1AQ8TE12 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1AQ8TE12 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AC105339.3-201ENST00000560043 636 ntBASIC17.35■□□□□ 0.37
LMX1AQ8TE12 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AC107918.4-202ENST00000641623 219 ntBASIC17.35■□□□□ 0.37
LMX1AQ8TE12 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PMPCAP1-201ENST00000508114 1576 ntBASIC17.35■□□□□ 0.37
LMX1AQ8TE12 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AC079776.2-201ENST00000641154 1609 ntBASIC17.35■□□□□ 0.37
LMX1AQ8TE12 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 AL096828.2-201ENST00000567259 1965 ntBASIC17.35■□□□□ 0.37
LMX1AQ8TE12 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1AQ8TE12 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LMX1AQ8TE12 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms