Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
USP54Q70EL1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 ENSA-206ENST00000361631 725 ntTSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 MYCLP1-201ENST00000372451 1075 ntBASIC23.61■■□□□ 1.37
USP54Q70EL1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 AP000344.2-201ENST00000512987 629 ntBASIC23.61■■□□□ 1.37
USP54Q70EL1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC23.61■■□□□ 1.37
USP54Q70EL1 KRT19P2-202ENST00000557173 1012 ntBASIC23.61■■□□□ 1.37
USP54Q70EL1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 AC004790.2-201ENST00000623588 572 ntBASIC23.61■■□□□ 1.37
USP54Q70EL1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC23.61■■□□□ 1.37
USP54Q70EL1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC23.61■■□□□ 1.37
USP54Q70EL1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.61■■□□□ 1.37
USP54Q70EL1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP54Q70EL1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
USP54Q70EL1 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC23.6■■□□□ 1.37
USP54Q70EL1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.6■■□□□ 1.37
USP54Q70EL1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 AC135776.1-201ENST00000319817 2481 ntBASIC23.6■■□□□ 1.37
USP54Q70EL1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 HTR5BP-201ENST00000430851 1154 ntBASIC23.6■■□□□ 1.37
USP54Q70EL1 VN2R19P-201ENST00000442399 1052 ntBASIC23.6■■□□□ 1.37
USP54Q70EL1 AC027796.2-201ENST00000575326 344 ntBASIC23.6■■□□□ 1.37
USP54Q70EL1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC23.6■■□□□ 1.37
USP54Q70EL1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.6■■□□□ 1.37
USP54Q70EL1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP54Q70EL1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.59■■□□□ 1.37
USP54Q70EL1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.59■■□□□ 1.37
USP54Q70EL1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.59■■□□□ 1.37
USP54Q70EL1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
USP54Q70EL1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
USP54Q70EL1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC23.59■■□□□ 1.37
USP54Q70EL1 RPS8P6-201ENST00000426177 609 ntBASIC23.59■■□□□ 1.37
USP54Q70EL1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC23.59■■□□□ 1.37
USP54Q70EL1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC23.59■■□□□ 1.37
USP54Q70EL1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC23.59■■□□□ 1.37
USP54Q70EL1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP54Q70EL1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.59■■□□□ 1.37
USP54Q70EL1 SLC25A24-204ENST00000569674 2357 ntBASIC23.58■■□□□ 1.37
USP54Q70EL1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.58■■□□□ 1.37
USP54Q70EL1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP54Q70EL1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.58■■□□□ 1.37
USP54Q70EL1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP54Q70EL1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC23.58■■□□□ 1.37
USP54Q70EL1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC23.58■■□□□ 1.37
USP54Q70EL1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC23.58■■□□□ 1.37
USP54Q70EL1 AC068137.2-201ENST00000605408 478 ntBASIC23.58■■□□□ 1.37
USP54Q70EL1 GGTLC5P-201ENST00000617623 998 ntBASIC23.58■■□□□ 1.37
USP54Q70EL1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC23.58■■□□□ 1.37
USP54Q70EL1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP54Q70EL1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.58■■□□□ 1.37
USP54Q70EL1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.58■■□□□ 1.37
USP54Q70EL1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP54Q70EL1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC23.58■■□□□ 1.37
USP54Q70EL1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.36
USP54Q70EL1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
USP54Q70EL1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.36
USP54Q70EL1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.58■■□□□ 1.36
USP54Q70EL1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC23.58■■□□□ 1.36
USP54Q70EL1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
USP54Q70EL1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.57■■□□□ 1.36
USP54Q70EL1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
USP54Q70EL1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms