Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 AC130371.2-201ENST00000619443 611 ntBASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 MYLKP1-201ENST00000509077 1580 ntBASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 KRT8P9-201ENST00000558927 1449 ntBASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 LINC01023-201ENST00000606054 436 ntBASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PPP4R4Q6NUP7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 C2orf69P3-201ENST00000565542 1120 ntBASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PPP4R4Q6NUP7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.15■□□□□ 0.34
PPP4R4Q6NUP7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms