Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 LAGE3P1-201ENST00000425356 484 ntBASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SHROOM1Q2M3G4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHROOM1Q2M3G4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AC019129.2-201ENST00000609837 1235 ntBASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AC009113.1-201ENST00000570267 2443 ntBASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM1Q2M3G4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 MIR1233-2-201ENST00000408138 82 ntBASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 MIR1233-1-201ENST00000408722 82 ntBASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM1Q2M3G4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
SHROOM1Q2M3G4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms