Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SF3A1Q15459 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.67■□□□□ 0.9
SF3A1Q15459 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SF3A1Q15459 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.67■□□□□ 0.9
SF3A1Q15459 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.67■□□□□ 0.9
SF3A1Q15459 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.67■□□□□ 0.9
SF3A1Q15459 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.67■□□□□ 0.9
SF3A1Q15459 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SF3A1Q15459 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SF3A1Q15459 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.66■□□□□ 0.9
SF3A1Q15459 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.66■□□□□ 0.9
SF3A1Q15459 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.66■□□□□ 0.9
SF3A1Q15459 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.66■□□□□ 0.9
SF3A1Q15459 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.66■□□□□ 0.9
SF3A1Q15459 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SF3A1Q15459 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.66■□□□□ 0.9
SF3A1Q15459 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SF3A1Q15459 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.65■□□□□ 0.9
SF3A1Q15459 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 AC100803.2-201ENST00000562459 1963 ntBASIC20.65■□□□□ 0.9
SF3A1Q15459 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.65■□□□□ 0.9
SF3A1Q15459 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SF3A1Q15459 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
SF3A1Q15459 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.65■□□□□ 0.9
SF3A1Q15459 DUTP2-201ENST00000519164 463 ntBASIC20.65■□□□□ 0.9
SF3A1Q15459 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 AC012306.2-201ENST00000609350 630 ntBASIC20.65■□□□□ 0.9
SF3A1Q15459 AC133561.5-201ENST00000635547 218 ntBASIC20.65■□□□□ 0.9
SF3A1Q15459 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.65■□□□□ 0.9
SF3A1Q15459 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SF3A1Q15459 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SF3A1Q15459 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SF3A1Q15459 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.64■□□□□ 0.9
SF3A1Q15459 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SF3A1Q15459 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SF3A1Q15459 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SF3A1Q15459 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SF3A1Q15459 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
SF3A1Q15459 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 LINC00167-201ENST00000530583 1419 ntBASIC20.64■□□□□ 0.89
SF3A1Q15459 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SF3A1Q15459 AC008687.5-201ENST00000593746 558 ntBASIC20.64■□□□□ 0.89
SF3A1Q15459 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.64■□□□□ 0.89
SF3A1Q15459 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.64■□□□□ 0.89
SF3A1Q15459 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.64■□□□□ 0.89
SF3A1Q15459 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SF3A1Q15459 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SF3A1Q15459 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SF3A1Q15459 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SF3A1Q15459 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.63■□□□□ 0.89
SF3A1Q15459 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SF3A1Q15459 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms