Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.29■■□□□ 1
COL4A5P29400 SIGLEC30P-201ENST00000455569 941 ntBASIC21.29■■□□□ 1
COL4A5P29400 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.29■■□□□ 1
COL4A5P29400 AC109462.3-201ENST00000573934 613 ntBASIC21.29■■□□□ 1
COL4A5P29400 STK25P1-201ENST00000585406 838 ntBASIC21.29■■□□□ 1
COL4A5P29400 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 AC006116.8-202ENST00000587620 1550 ntBASIC21.29■■□□□ 1
COL4A5P29400 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 AC116562.4-201ENST00000641316 2276 ntBASIC21.29■■□□□ 1
COL4A5P29400 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.29■■□□□ 1
COL4A5P29400 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL4A5P29400 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.28■■□□□ 1
COL4A5P29400 AC138761.1-201ENST00000584393 385 ntBASIC21.28■■□□□ 1
COL4A5P29400 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.28■■□□□ 1
COL4A5P29400 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
COL4A5P29400 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.28■■□□□ 1
COL4A5P29400 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.28■■□□□ 1
COL4A5P29400 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.28■■□□□ 1
COL4A5P29400 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.28■■□□□ 1
COL4A5P29400 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.28■■□□□ 1
COL4A5P29400 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A5P29400 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL4A5P29400 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.28■■□□□ 1
COL4A5P29400 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
COL4A5P29400 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.27■■□□□ 1
COL4A5P29400 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.27■■□□□ 1
COL4A5P29400 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.27■■□□□ 1
COL4A5P29400 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.27■■□□□ 1
COL4A5P29400 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A5P29400 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.27■■□□□ 1
COL4A5P29400 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.27■■□□□ 1
COL4A5P29400 DUTP2-201ENST00000519164 463 ntBASIC21.27■■□□□ 1
COL4A5P29400 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.27■■□□□ 1
COL4A5P29400 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.27■■□□□ 1
COL4A5P29400 AC004835.2-201ENST00000603762 682 ntBASIC21.27■■□□□ 1
COL4A5P29400 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.27■□□□□ 0.99
COL4A5P29400 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A5P29400 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 HLA-J-202ENST00000469281 1241 ntBASIC21.26■□□□□ 0.99
COL4A5P29400 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A5P29400 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.26■□□□□ 0.99
COL4A5P29400 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A5P29400 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A5P29400 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A5P29400 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A5P29400 AC009336.1-201ENST00000608941 1553 ntBASIC21.25■□□□□ 0.99
COL4A5P29400 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A5P29400 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.25■□□□□ 0.99
COL4A5P29400 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.25■□□□□ 0.99
COL4A5P29400 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A5P29400 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL4A5P29400 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A5P29400 AC023141.13-201ENST00000604991 943 ntBASIC21.25■□□□□ 0.99
COL4A5P29400 AC009093.7-201ENST00000623853 1223 ntBASIC21.25■□□□□ 0.99
COL4A5P29400 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A5P29400 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL4A5P29400 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A5P29400 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A5P29400 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms