Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
XRCC1P18887 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 AC093677.2-201ENST00000600169 1863 ntBASIC17.84■□□□□ 0.45
XRCC1P18887 AC138028.4-201ENST00000564984 1845 ntBASIC17.84■□□□□ 0.45
XRCC1P18887 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 CHCHD2P8-201ENST00000429873 447 ntBASIC17.84■□□□□ 0.45
XRCC1P18887 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.84■□□□□ 0.45
XRCC1P18887 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 AC012317.2-201ENST00000623305 2251 ntBASIC17.84■□□□□ 0.45
XRCC1P18887 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 AL645608.8-201ENST00000606034 2086 ntBASIC17.84■□□□□ 0.45
XRCC1P18887 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.84■□□□□ 0.45
XRCC1P18887 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
XRCC1P18887 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.84■□□□□ 0.45
XRCC1P18887 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
XRCC1P18887 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.83■□□□□ 0.45
XRCC1P18887 Z83836.1-201ENST00000624605 1642 ntBASIC17.83■□□□□ 0.45
XRCC1P18887 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
XRCC1P18887 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
XRCC1P18887 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.83■□□□□ 0.45
XRCC1P18887 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
XRCC1P18887 IGHGP-201ENST00000390555 1178 ntBASIC17.83■□□□□ 0.44
XRCC1P18887 SLC25A6P5-201ENST00000435663 894 ntBASIC17.83■□□□□ 0.44
XRCC1P18887 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 GPR32P1-201ENST00000601788 811 ntBASIC17.83■□□□□ 0.44
XRCC1P18887 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.83■□□□□ 0.44
XRCC1P18887 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
XRCC1P18887 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
XRCC1P18887 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
XRCC1P18887 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.82■□□□□ 0.44
XRCC1P18887 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.82■□□□□ 0.44
XRCC1P18887 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.82■□□□□ 0.44
XRCC1P18887 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.82■□□□□ 0.44
XRCC1P18887 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
XRCC1P18887 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.82■□□□□ 0.44
XRCC1P18887 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.82■□□□□ 0.44
XRCC1P18887 AC008687.5-201ENST00000593746 558 ntBASIC17.82■□□□□ 0.44
XRCC1P18887 AL390719.2-201ENST00000606993 987 ntBASIC17.82■□□□□ 0.44
XRCC1P18887 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.82■□□□□ 0.44
XRCC1P18887 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.82■□□□□ 0.44
XRCC1P18887 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
XRCC1P18887 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
XRCC1P18887 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
XRCC1P18887 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
XRCC1P18887 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
XRCC1P18887 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms