Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
LDLRP01130 AC108860.2-201ENST00000562760 2183 ntBASIC17.31■□□□□ 0.36
LDLRP01130 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.31■□□□□ 0.36
LDLRP01130 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.31■□□□□ 0.36
LDLRP01130 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.31■□□□□ 0.36
LDLRP01130 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 AL441883.1-201ENST00000566170 1045 ntBASIC17.31■□□□□ 0.36
LDLRP01130 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LDLRP01130 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 AC140113.3-201ENST00000605663 199 ntBASIC17.31■□□□□ 0.36
LDLRP01130 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.31■□□□□ 0.36
LDLRP01130 AC008622.2-201ENST00000617006 1229 ntBASIC17.31■□□□□ 0.36
LDLRP01130 AC012313.10-201ENST00000623509 926 ntBASIC17.31■□□□□ 0.36
LDLRP01130 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LDLRP01130 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.31■□□□□ 0.36
LDLRP01130 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LDLRP01130 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDLRP01130 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.31■□□□□ 0.36
LDLRP01130 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
LDLRP01130 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 AC124067.4-201ENST00000519691 2379 ntBASIC17.3■□□□□ 0.36
LDLRP01130 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.3■□□□□ 0.36
LDLRP01130 TSPY17P-201ENST00000450329 467 ntBASIC17.3■□□□□ 0.36
LDLRP01130 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.3■□□□□ 0.36
LDLRP01130 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 AL136038.3-201ENST00000561909 1096 ntBASIC17.3■□□□□ 0.36
LDLRP01130 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.3■□□□□ 0.36
LDLRP01130 AL023803.3-201ENST00000615559 522 ntBASIC17.3■□□□□ 0.36
LDLRP01130 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
LDLRP01130 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDLRP01130 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LDLRP01130 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LDLRP01130 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LDLRP01130 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LDLRP01130 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.29■□□□□ 0.36
LDLRP01130 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.29■□□□□ 0.36
LDLRP01130 PRSS44-201ENST00000515154 1146 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms