Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 AL096828.2-201ENST00000567259 1965 ntBASIC16.92■□□□□ 0.3
CLPTM1O96005 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.92■□□□□ 0.3
CLPTM1O96005 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.92■□□□□ 0.3
CLPTM1O96005 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CLPTM1O96005 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.92■□□□□ 0.3
CLPTM1O96005 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
CLPTM1O96005 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CLPTM1O96005 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.92■□□□□ 0.3
CLPTM1O96005 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
CLPTM1O96005 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CLPTM1O96005 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CLPTM1O96005 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLPTM1O96005 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 HYMAI-201ENST00000635591 3347 ntBASIC16.91■□□□□ 0.3
CLPTM1O96005 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
CLPTM1O96005 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CLPTM1O96005 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.91■□□□□ 0.3
CLPTM1O96005 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.91■□□□□ 0.3
CLPTM1O96005 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 AC133681.1-201ENST00000465482 601 ntBASIC16.91■□□□□ 0.3
CLPTM1O96005 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
CLPTM1O96005 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.91■□□□□ 0.3
CLPTM1O96005 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.91■□□□□ 0.3
CLPTM1O96005 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLPTM1O96005 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CLPTM1O96005 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 NBPF21P-201ENST00000425093 1451 ntBASIC16.91■□□□□ 0.3
CLPTM1O96005 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLPTM1O96005 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLPTM1O96005 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CLPTM1O96005 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.9■□□□□ 0.3
CLPTM1O96005 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CLPTM1O96005 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.9■□□□□ 0.3
CLPTM1O96005 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLPTM1O96005 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.9■□□□□ 0.3
CLPTM1O96005 AC110285.5-201ENST00000611501 352 ntBASIC16.9■□□□□ 0.3
CLPTM1O96005 AC066615.1-201ENST00000640911 628 ntBASIC16.9■□□□□ 0.3
CLPTM1O96005 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
CLPTM1O96005 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.9■□□□□ 0.3
CLPTM1O96005 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.9■□□□□ 0.3
CLPTM1O96005 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms