Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC124067.4-201ENST00000519691 2379 ntBASIC15.84■□□□□ 0.13
SGCEO43556 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AL391005.1-201ENST00000623953 2435 ntBASIC15.84■□□□□ 0.13
SGCEO43556 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC008764.6-201ENST00000595909 2069 ntBASIC15.84■□□□□ 0.13
SGCEO43556 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 SLC25A6P5-201ENST00000435663 894 ntBASIC15.84■□□□□ 0.13
SGCEO43556 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC092647.4-201ENST00000457211 535 ntBASIC15.84■□□□□ 0.13
SGCEO43556 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.84■□□□□ 0.13
SGCEO43556 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.84■□□□□ 0.13
SGCEO43556 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 AC079602.3-201ENST00000623931 403 ntBASIC15.84■□□□□ 0.13
SGCEO43556 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.84■□□□□ 0.13
SGCEO43556 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SGCEO43556 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SGCEO43556 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
SGCEO43556 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.83■□□□□ 0.13
SGCEO43556 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SGCEO43556 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
SGCEO43556 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.83■□□□□ 0.12
SGCEO43556 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.83■□□□□ 0.12
SGCEO43556 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.83■□□□□ 0.12
SGCEO43556 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SGCEO43556 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.83■□□□□ 0.12
SGCEO43556 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.83■□□□□ 0.12
SGCEO43556 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SGCEO43556 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.83■□□□□ 0.12
SGCEO43556 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SGCEO43556 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 KRT89P-201ENST00000620027 1478 ntBASIC15.83■□□□□ 0.12
SGCEO43556 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SGCEO43556 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SGCEO43556 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
SGCEO43556 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms