Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.54■□□□□ 0.72
CLDN3O15551 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 AC138028.4-201ENST00000564984 1845 ntBASIC19.54■□□□□ 0.72
CLDN3O15551 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CLDN3O15551 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.54■□□□□ 0.72
CLDN3O15551 DUSP5P1-201ENST00000441325 1139 ntBASIC19.54■□□□□ 0.72
CLDN3O15551 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.54■□□□□ 0.72
CLDN3O15551 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.54■□□□□ 0.72
CLDN3O15551 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLDN3O15551 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN3O15551 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 AC125634.1-201ENST00000438758 1403 ntBASIC19.53■□□□□ 0.72
CLDN3O15551 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
CLDN3O15551 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 FOSL1P1-201ENST00000511041 816 ntBASIC19.53■□□□□ 0.72
CLDN3O15551 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.53■□□□□ 0.72
CLDN3O15551 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN3O15551 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CLDN3O15551 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CLDN3O15551 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN3O15551 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.52■□□□□ 0.72
CLDN3O15551 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.52■□□□□ 0.72
CLDN3O15551 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.52■□□□□ 0.72
CLDN3O15551 AC138894.3-201ENST00000603787 634 ntBASIC19.52■□□□□ 0.72
CLDN3O15551 AL138831.2-201ENST00000606564 490 ntBASIC19.52■□□□□ 0.72
CLDN3O15551 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.52■□□□□ 0.72
CLDN3O15551 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CLDN3O15551 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN3O15551 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CLDN3O15551 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.52■□□□□ 0.71
CLDN3O15551 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLDN3O15551 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.51■□□□□ 0.71
CLDN3O15551 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.51■□□□□ 0.71
CLDN3O15551 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.51■□□□□ 0.71
CLDN3O15551 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 AL121772.3-201ENST00000610840 674 ntBASIC19.51■□□□□ 0.71
CLDN3O15551 KRT8P47-201ENST00000604727 1398 ntBASIC19.51■□□□□ 0.71
CLDN3O15551 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms