Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 AC132938.2-201ENST00000579188 680 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 AL591163.1-201ENST00000641757 987 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 HAUS4P1-201ENST00000406739 1145 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 GGTLC5P-201ENST00000617623 998 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 AC068587.9-201ENST00000641814 219 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 KRT8P23-201ENST00000560090 1207 ntBASIC13.73□□□□□ -0.21
COL6A5A8TX70 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 AC022144.1-201ENST00000602255 1580 ntBASIC13.73□□□□□ -0.21
COL6A5A8TX70 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.73□□□□□ -0.21
COL6A5A8TX70 DGCR5-201ENST00000399539 862 ntBASIC13.73□□□□□ -0.21
COL6A5A8TX70 TREML5P-201ENST00000421694 576 ntBASIC13.73□□□□□ -0.21
COL6A5A8TX70 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A5A8TX70 FEM1AP3-201ENST00000403722 1741 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AL049757.1-201ENST00000616842 1596 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AC098614.1-201ENST00000368528 745 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 AC084121.4-201ENST00000641598 221 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 AF228730.8-201ENST00000642140 221 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 KRT17P8-201ENST00000540749 863 ntBASIC13.72□□□□□ -0.21
COL6A5A8TX70 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A5A8TX70 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A5A8TX70 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A5A8TX70 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A5A8TX70 PWWP2AP1-201ENST00000429776 2273 ntBASIC13.71□□□□□ -0.21
COL6A5A8TX70 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms