Protein–RNA interactions for Protein: A6NFC5

TMEM235, Transmembrane protein 235, humanhuman

Predictions only

Length 223 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM235A6NFC5 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMEM235A6NFC5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 UBALD1-205ENST00000590891 2641 ntBASIC15.29■□□□□ 0.04
TMEM235A6NFC5 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
TMEM235A6NFC5 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 DUTP2-201ENST00000519164 463 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 C1QBPP2-201ENST00000528754 825 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 RARRES2P10-201ENST00000564312 460 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 AC006058.3-201ENST00000606217 1069 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 LINC00304-203ENST00000565008 1864 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 AC132938.6-201ENST00000623828 1655 ntBASIC15.28■□□□□ 0.04
TMEM235A6NFC5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TMEM235A6NFC5 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 KRT8P7-201ENST00000533003 1432 ntBASIC15.27■□□□□ 0.04
TMEM235A6NFC5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 HLA-L-209ENST00000420110 1011 ntBASIC15.27■□□□□ 0.04
TMEM235A6NFC5 FAM197Y1-201ENST00000421178 764 ntBASIC15.27■□□□□ 0.04
TMEM235A6NFC5 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.27■□□□□ 0.04
TMEM235A6NFC5 CA15P1-201ENST00000481698 905 ntBASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms