Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AP001269.4-201ENST00000609611 512 ntBASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TM9SF3Q9HD45 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
TM9SF3Q9HD45 LINC00602-201ENST00000629776 2065 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 AL049840.3-201ENST00000602669 611 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 AL138831.2-201ENST00000606564 490 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 MIR7706-201ENST00000613747 67 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
TM9SF3Q9HD45 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 INTS4P1-201ENST00000438455 1935 ntBASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 KRT18P58-201ENST00000527480 1120 ntBASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 AC139887.3-201ENST00000568585 713 ntBASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 FAM215A-202ENST00000632077 792 ntBASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TM9SF3Q9HD45 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms