Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.53■□□□□ 0.56
CDCA3Q99618 KRT19P2-202ENST00000557173 1012 ntBASIC18.53■□□□□ 0.56
CDCA3Q99618 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.53■□□□□ 0.56
CDCA3Q99618 AC027612.4-201ENST00000605371 583 ntBASIC18.53■□□□□ 0.56
CDCA3Q99618 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDCA3Q99618 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.53■□□□□ 0.56
CDCA3Q99618 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.53■□□□□ 0.56
CDCA3Q99618 AC007064.4-201ENST00000637740 555 ntBASIC18.53■□□□□ 0.56
CDCA3Q99618 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDCA3Q99618 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDCA3Q99618 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CDCA3Q99618 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.53■□□□□ 0.56
CDCA3Q99618 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDCA3Q99618 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDCA3Q99618 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CDCA3Q99618 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.52■□□□□ 0.56
CDCA3Q99618 BCAR1-209ENST00000546196 1340 ntBASIC18.52■□□□□ 0.56
CDCA3Q99618 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDCA3Q99618 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.52■□□□□ 0.56
CDCA3Q99618 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 TSEN15P1-201ENST00000423257 515 ntBASIC18.52■□□□□ 0.56
CDCA3Q99618 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.52■□□□□ 0.56
CDCA3Q99618 RHOQP3-201ENST00000437982 621 ntBASIC18.52■□□□□ 0.56
CDCA3Q99618 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.52■□□□□ 0.56
CDCA3Q99618 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.52■□□□□ 0.56
CDCA3Q99618 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.52■□□□□ 0.56
CDCA3Q99618 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.52■□□□□ 0.56
CDCA3Q99618 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.52■□□□□ 0.56
CDCA3Q99618 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDCA3Q99618 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.52■□□□□ 0.55
CDCA3Q99618 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CDCA3Q99618 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CDCA3Q99618 AC005082.1-201ENST00000413042 2259 ntBASIC18.52■□□□□ 0.55
CDCA3Q99618 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CDCA3Q99618 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.52■□□□□ 0.55
CDCA3Q99618 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDCA3Q99618 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDCA3Q99618 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CDCA3Q99618 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CDCA3Q99618 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 AC074386.1-202ENST00000463561 864 ntBASIC18.51■□□□□ 0.55
CDCA3Q99618 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.51■□□□□ 0.55
CDCA3Q99618 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.51■□□□□ 0.55
CDCA3Q99618 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.51■□□□□ 0.55
CDCA3Q99618 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CDCA3Q99618 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
CDCA3Q99618 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.51■□□□□ 0.55
CDCA3Q99618 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.51■□□□□ 0.55
CDCA3Q99618 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDCA3Q99618 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.51■□□□□ 0.55
CDCA3Q99618 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.5■□□□□ 0.55
CDCA3Q99618 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
CDCA3Q99618 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.5■□□□□ 0.55
CDCA3Q99618 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 FAM58CP-201ENST00000435741 640 ntBASIC18.5■□□□□ 0.55
CDCA3Q99618 DDX43P3-201ENST00000441064 443 ntBASIC18.5■□□□□ 0.55
CDCA3Q99618 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.5■□□□□ 0.55
CDCA3Q99618 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.5■□□□□ 0.55
CDCA3Q99618 SPCS2P1-201ENST00000561636 679 ntBASIC18.5■□□□□ 0.55
CDCA3Q99618 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.5■□□□□ 0.55
CDCA3Q99618 AC004835.2-201ENST00000603762 682 ntBASIC18.5■□□□□ 0.55
CDCA3Q99618 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CDCA3Q99618 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CDCA3Q99618 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CDCA3Q99618 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 AC018445.3-201ENST00000624177 1945 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms