Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 AC138649.4-201ENST00000612222 287 ntBASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.16■□□□□ 0.02
CSMD1Q96PZ7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 BX005266.1-201ENST00000473402 457 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC004835.2-201ENST00000603762 682 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 RNA5SP421-201ENST00000516864 134 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC010507.1-201ENST00000633895 436 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC025048.6-201ENST00000634326 1161 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC079776.2-201ENST00000641154 1609 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 AC004461.1-201ENST00000412461 403 ntBASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CSMD1Q96PZ7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 SIGLEC16-201ENST00000599858 1437 ntBASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 ACTG1P14-201ENST00000446382 1122 ntBASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 SDHAP2-201ENST00000455183 2001 ntBASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD1Q96PZ7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 FAM207CP-201ENST00000443486 507 ntBASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 TFAMP1-201ENST00000412727 736 ntBASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 ATP5G2P4-201ENST00000442175 420 ntBASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms