Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.32■□□□□ 0.68
LRCH3Q96II8 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LRCH3Q96II8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LRCH3Q96II8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LRCH3Q96II8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LRCH3Q96II8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LRCH3Q96II8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LRCH3Q96II8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.3■□□□□ 0.68
LRCH3Q96II8 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 BASP1P1-201ENST00000430708 665 ntBASIC19.3■□□□□ 0.68
LRCH3Q96II8 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 AC091812.2-201ENST00000619081 385 ntBASIC19.3■□□□□ 0.68
LRCH3Q96II8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRCH3Q96II8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LRCH3Q96II8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 BCAR1-209ENST00000546196 1340 ntBASIC19.29■□□□□ 0.68
LRCH3Q96II8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 IGLL3P-201ENST00000412472 434 ntBASIC19.29■□□□□ 0.68
LRCH3Q96II8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.29■□□□□ 0.68
LRCH3Q96II8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRCH3Q96II8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 AP000974.1-201ENST00000623909 2387 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 AC055876.3-201ENST00000431496 288 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 ATP5G2P4-201ENST00000442175 420 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 KRT19P2-202ENST00000557173 1012 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 LINC02560-201ENST00000596379 459 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 AC138649.4-201ENST00000612222 287 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 AC004790.2-201ENST00000623588 572 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 AC008761.3-201ENST00000624803 892 ntBASIC19.28■□□□□ 0.68
LRCH3Q96II8 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRCH3Q96II8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.28■□□□□ 0.68
LRCH3Q96II8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms