Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 AC112777.1-201ENST00000540175 1423 ntBASIC17.19■□□□□ 0.34
VMP1Q96GC9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VMP1Q96GC9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.19■□□□□ 0.34
VMP1Q96GC9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.19■□□□□ 0.34
VMP1Q96GC9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 HBZP1-201ENST00000354915 429 ntBASIC17.18■□□□□ 0.34
VMP1Q96GC9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 ZNF444P1-201ENST00000559497 298 ntBASIC17.18■□□□□ 0.34
VMP1Q96GC9 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 AC083849.1-201ENST00000615227 514 ntBASIC17.18■□□□□ 0.34
VMP1Q96GC9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.18■□□□□ 0.34
VMP1Q96GC9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VMP1Q96GC9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.17■□□□□ 0.34
VMP1Q96GC9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VMP1Q96GC9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AL162741.1-201ENST00000565563 1558 ntBASIC17.16■□□□□ 0.34
VMP1Q96GC9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms