Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 RN7SL510P-201ENST00000581311 263 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 AC138894.3-201ENST00000603787 634 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 CROCCP3-202ENST00000420820 1947 ntBASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.29■□□□□ 0.36
CLIP3Q96DZ5 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 AC046158.3-201ENST00000624947 2558 ntBASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CLIP3Q96DZ5 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 SDHAP2-201ENST00000455183 2001 ntBASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 KRT17P6-201ENST00000453795 1220 ntBASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 AC099336.1-202ENST00000602961 463 ntBASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 IFNL4P1-201ENST00000607083 540 ntBASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 AL732292.2-201ENST00000609649 430 ntBASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
CLIP3Q96DZ5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.35
CLIP3Q96DZ5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.26■□□□□ 0.35
CLIP3Q96DZ5 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms