Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC096633.1-201ENST00000422446 749 ntBASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 DDX43P3-201ENST00000441064 443 ntBASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 KRT17P6-201ENST00000453795 1220 ntBASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AL671883.3-201ENST00000603274 991 ntBASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM3Q8TF72 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 AL022342.1-201ENST00000400363 863 ntBASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 SLC25A6P5-201ENST00000435663 894 ntBASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 MIR3652-201ENST00000579335 131 ntBASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 NPAP1P7-201ENST00000613027 823 ntBASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 BX276092.7-203ENST00000637198 1536 ntBASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM3Q8TF72 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AL845331.1-201ENST00000424978 1190 ntBASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AP002383.4-201ENST00000442518 975 ntBASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 MTCL1P1-201ENST00000446207 792 ntBASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms