Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 POLD2P1-201ENST00000511220 997 ntBASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-3Q8TAU0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 AL031284.1-201ENST00000419297 478 ntBASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 HMGN1P19-201ENST00000436976 333 ntBASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 BNIP3P18-201ENST00000593976 575 ntBASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-3Q8TAU0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 AC008764.6-201ENST00000595909 2069 ntBASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
NKX2-3Q8TAU0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 FAM197Y8-203ENST00000450145 560 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 AF238378.1-201ENST00000526806 358 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 LINC02084-201ENST00000606069 1096 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 NSUN5P1-202ENST00000421140 1535 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 NSUN5P2-203ENST00000457352 1529 ntBASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-3Q8TAU0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 AC005104.2-201ENST00000427818 678 ntBASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 AF186996.4-201ENST00000467186 377 ntBASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 AL138831.2-201ENST00000606564 490 ntBASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms