Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 AL136038.3-201ENST00000561909 1096 ntBASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 NTF6B-201ENST00000591913 560 ntBASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC65Q8IXS2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC65Q8IXS2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 AL031133.1-201ENST00000406807 723 ntBASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC65Q8IXS2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AC112698.1-201ENST00000510299 916 ntBASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AL590326.2-201ENST00000625139 305 ntBASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AL121956.5-201ENST00000625261 221 ntBASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC65Q8IXS2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 AC005332.8-201ENST00000622750 2735 ntBASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC65Q8IXS2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CCDC65Q8IXS2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms