Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.94■■□□□ 1.1
USP48Q86UV5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.94■■□□□ 1.1
USP48Q86UV5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.94■■□□□ 1.1
USP48Q86UV5 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.94■■□□□ 1.1
USP48Q86UV5 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.93■■□□□ 1.1
USP48Q86UV5 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
USP48Q86UV5 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
USP48Q86UV5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.93■■□□□ 1.1
USP48Q86UV5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.93■■□□□ 1.1
USP48Q86UV5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 SCARNA2-201ENST00000458748 420 ntBASIC21.93■■□□□ 1.1
USP48Q86UV5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.93■■□□□ 1.1
USP48Q86UV5 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.93■■□□□ 1.1
USP48Q86UV5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.93■■□□□ 1.1
USP48Q86UV5 MTDHP3-201ENST00000594186 672 ntBASIC21.93■■□□□ 1.1
USP48Q86UV5 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
USP48Q86UV5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
USP48Q86UV5 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.92■■□□□ 1.1
USP48Q86UV5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.92■■□□□ 1.1
USP48Q86UV5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.92■■□□□ 1.1
USP48Q86UV5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
USP48Q86UV5 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.92■■□□□ 1.1
USP48Q86UV5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
USP48Q86UV5 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
USP48Q86UV5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.92■■□□□ 1.1
USP48Q86UV5 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.92■■□□□ 1.1
USP48Q86UV5 RCN1P2-201ENST00000398357 915 ntBASIC21.92■■□□□ 1.1
USP48Q86UV5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 PMS2P2-201ENST00000425039 1128 ntBASIC21.92■■□□□ 1.1
USP48Q86UV5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.92■■□□□ 1.1
USP48Q86UV5 AC027796.2-201ENST00000575326 344 ntBASIC21.92■■□□□ 1.1
USP48Q86UV5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
USP48Q86UV5 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
USP48Q86UV5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
USP48Q86UV5 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.91■■□□□ 1.1
USP48Q86UV5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
USP48Q86UV5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 KRT8P32-201ENST00000512863 1461 ntBASIC21.91■■□□□ 1.1
USP48Q86UV5 KRT89P-201ENST00000620027 1478 ntBASIC21.91■■□□□ 1.1
USP48Q86UV5 AC104109.2-201ENST00000602919 1418 ntBASIC21.91■■□□□ 1.1
USP48Q86UV5 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.91■■□□□ 1.1
USP48Q86UV5 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.91■■□□□ 1.1
USP48Q86UV5 AC022898.2-201ENST00000616822 1312 ntBASIC21.91■■□□□ 1.1
USP48Q86UV5 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 UPF3AP3-201ENST00000420996 769 ntBASIC21.91■■□□□ 1.1
USP48Q86UV5 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.91■■□□□ 1.1
USP48Q86UV5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC21.91■■□□□ 1.1
USP48Q86UV5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC21.91■■□□□ 1.1
USP48Q86UV5 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
USP48Q86UV5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
USP48Q86UV5 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
USP48Q86UV5 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
USP48Q86UV5 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.9■■□□□ 1.1
USP48Q86UV5 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
USP48Q86UV5 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
USP48Q86UV5 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.9■■□□□ 1.1
USP48Q86UV5 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 RPS8P6-201ENST00000426177 609 ntBASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms