Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AL121761.2-201ENST00000598007 1648 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AC011270.2-201ENST00000624293 2550 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.21■□□□□ 0.34
PPP4R4Q6NUP7 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
PPP4R4Q6NUP7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 MESTP1-201ENST00000404287 994 ntBASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 AL096828.2-201ENST00000567259 1965 ntBASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PPP4R4Q6NUP7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 AC211429.1-201ENST00000415277 523 ntBASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 MFAP1P1-201ENST00000442257 1255 ntBASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 NAPSB-206ENST00000562112 1266 ntBASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 DGCR10-201ENST00000609839 495 ntBASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PPP4R4Q6NUP7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 AC008040.2-201ENST00000461049 708 ntBASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.18■□□□□ 0.34
PPP4R4Q6NUP7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms