Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 AC023274.1-201ENST00000418278 595 ntBASIC17.2■□□□□ 0.34
COL28A1Q2UY09 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 MTDHP5-201ENST00000598980 586 ntBASIC17.2■□□□□ 0.34
COL28A1Q2UY09 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 HLA-J-201ENST00000462773 1622 ntBASIC17.2■□□□□ 0.34
COL28A1Q2UY09 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 RBM17P3-201ENST00000417687 1192 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AL645939.2-201ENST00000427340 991 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AC007967.2-201ENST00000432613 625 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 RPS2P1-201ENST00000434010 821 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AC104390.1-201ENST00000555663 520 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.19■□□□□ 0.34
COL28A1Q2UY09 AL512353.2-201ENST00000448759 1962 ntBASIC17.19■□□□□ 0.34
COL28A1Q2UY09 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 AL353692.3-201ENST00000407031 1396 ntBASIC17.18■□□□□ 0.34
COL28A1Q2UY09 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 AC106028.4-201ENST00000614509 607 ntBASIC17.18■□□□□ 0.34
COL28A1Q2UY09 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
COL28A1Q2UY09 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL28A1Q2UY09 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms