Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL4A4P53420 AC093677.2-201ENST00000600169 1863 ntBASIC19.03■□□□□ 0.64
COL4A4P53420 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A4P53420 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A4P53420 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A4P53420 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A4P53420 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 AC009113.1-201ENST00000570267 2443 ntBASIC19.02■□□□□ 0.64
COL4A4P53420 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A4P53420 AC090164.3-201ENST00000610780 2143 ntBASIC19.02■□□□□ 0.64
COL4A4P53420 AC005593.1-201ENST00000624894 515 ntBASIC19.02■□□□□ 0.64
COL4A4P53420 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A4P53420 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
COL4A4P53420 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.02■□□□□ 0.63
COL4A4P53420 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A4P53420 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.01■□□□□ 0.63
COL4A4P53420 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A4P53420 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A4P53420 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A4P53420 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 AC093512.1-201ENST00000617969 520 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL4A4P53420 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 PMPCAP1-201ENST00000508114 1576 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A4P53420 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 PRSS29P-201ENST00000440800 595 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A4P53420 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A4P53420 AC010507.1-201ENST00000633895 436 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 AL022326.1-202ENST00000641533 845 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 AP000867.4-201ENST00000641616 219 ntBASIC19.01■□□□□ 0.63
COL4A4P53420 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A4P53420 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A4P53420 AC132938.6-201ENST00000623828 1655 ntBASIC19■□□□□ 0.63
COL4A4P53420 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 KLF4P1-201ENST00000412782 1185 ntBASIC19■□□□□ 0.63
COL4A4P53420 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19■□□□□ 0.63
COL4A4P53420 HCG4B-203ENST00000450128 991 ntBASIC19■□□□□ 0.63
COL4A4P53420 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL4A4P53420 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19■□□□□ 0.63
COL4A4P53420 AC092364.2-202ENST00000597012 1073 ntBASIC19■□□□□ 0.63
COL4A4P53420 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL4A4P53420 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19■□□□□ 0.63
COL4A4P53420 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19■□□□□ 0.63
COL4A4P53420 AC148477.5-201ENST00000625164 1645 ntBASIC19■□□□□ 0.63
COL4A4P53420 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL4A4P53420 AL020996.1-203ENST00000536896 2307 ntBASIC19■□□□□ 0.63
COL4A4P53420 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL4A4P53420 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A4P53420 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A4P53420 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A4P53420 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 LINC00602-201ENST00000629776 2065 ntBASIC18.99■□□□□ 0.63
COL4A4P53420 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
COL4A4P53420 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A4P53420 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms