Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SOX3P41225 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 BX276092.5-203ENST00000456199 560 ntBASIC16.87■□□□□ 0.29
SOX3P41225 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.87■□□□□ 0.29
SOX3P41225 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.87■□□□□ 0.29
SOX3P41225 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.87■□□□□ 0.29
SOX3P41225 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.87■□□□□ 0.29
SOX3P41225 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
SOX3P41225 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
SOX3P41225 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX3P41225 SDHAP2-201ENST00000455183 2001 ntBASIC16.86■□□□□ 0.29
SOX3P41225 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 TSPY22P-201ENST00000427496 604 ntBASIC16.86■□□□□ 0.29
SOX3P41225 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.86■□□□□ 0.29
SOX3P41225 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.86■□□□□ 0.29
SOX3P41225 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.86■□□□□ 0.29
SOX3P41225 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX3P41225 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX3P41225 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 AL121672.3-201ENST00000608644 468 ntBASIC16.86■□□□□ 0.29
SOX3P41225 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX3P41225 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SOX3P41225 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX3P41225 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SOX3P41225 Z83836.1-201ENST00000624605 1642 ntBASIC16.85■□□□□ 0.29
SOX3P41225 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
SOX3P41225 AC009053.2-201ENST00000563701 2365 ntBASIC16.85■□□□□ 0.29
SOX3P41225 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.85■□□□□ 0.29
SOX3P41225 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.85■□□□□ 0.29
SOX3P41225 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
SOX3P41225 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.85■□□□□ 0.29
SOX3P41225 AC005332.3-201ENST00000589904 676 ntBASIC16.85■□□□□ 0.29
SOX3P41225 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.85■□□□□ 0.29
SOX3P41225 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.85■□□□□ 0.29
SOX3P41225 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SOX3P41225 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.85■□□□□ 0.29
SOX3P41225 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SOX3P41225 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX3P41225 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SOX3P41225 PRORSD1P-202ENST00000563365 2154 ntBASIC16.85■□□□□ 0.29
SOX3P41225 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms