Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.01■□□□□ 0.47
PTPN4P29074 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 AC091076.1-201ENST00000610741 619 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 AC011558.1-201ENST00000623459 338 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 AC018695.7-201ENST00000624587 2492 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 AC008556.1-201ENST00000610908 2040 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18■□□□□ 0.47
PTPN4P29074 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18■□□□□ 0.47
PTPN4P29074 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18■□□□□ 0.47
PTPN4P29074 PRSS44-201ENST00000515154 1146 ntBASIC18■□□□□ 0.47
PTPN4P29074 AP003041.3-201ENST00000527151 707 ntBASIC18■□□□□ 0.47
PTPN4P29074 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18■□□□□ 0.47
PTPN4P29074 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18■□□□□ 0.47
PTPN4P29074 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18■□□□□ 0.47
PTPN4P29074 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18■□□□□ 0.47
PTPN4P29074 AC140113.3-201ENST00000605663 199 ntBASIC18■□□□□ 0.47
PTPN4P29074 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18■□□□□ 0.47
PTPN4P29074 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTPN4P29074 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTPN4P29074 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
PTPN4P29074 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18■□□□□ 0.47
PTPN4P29074 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PTPN4P29074 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18■□□□□ 0.47
PTPN4P29074 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PTPN4P29074 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.99■□□□□ 0.47
PTPN4P29074 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 AL031133.1-201ENST00000406807 723 ntBASIC17.99■□□□□ 0.47
PTPN4P29074 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.99■□□□□ 0.47
PTPN4P29074 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.99■□□□□ 0.47
PTPN4P29074 AL358472.4-201ENST00000633140 710 ntBASIC17.99■□□□□ 0.47
PTPN4P29074 AC068587.9-201ENST00000641814 219 ntBASIC17.99■□□□□ 0.47
PTPN4P29074 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.99■□□□□ 0.47
PTPN4P29074 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PTPN4P29074 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.99■□□□□ 0.47
PTPN4P29074 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.99■□□□□ 0.47
PTPN4P29074 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.99■□□□□ 0.47
PTPN4P29074 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PTPN4P29074 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms